The Vizgen Gene Panel Design Portal is a user-friendly web-based application for building custom gene panels to run on the MERSCOPE® Platform. With the Portal you can customize your gene panels with real-time feedback about which genes are most suitable for a MERFISH measurement. The Portal guides you through each step, making the entire process simple and easy.
Design fully custom MERFISH gene panels for up to 140 genes, up to 300 genes, up to 500 genes and up to 1000 for MERSCOPE.
Request quotes for gene panels and additional reagents such as MERSCOPE Gene Imaging Kits and MERSCOPE Slides.
Download .CSV file containing final gene list, transcript ID, abundance, and number of target regions in your custom designed MERFISH panel.
Access gene panels that were previously drafted or ordered.
The Vizgen Gene Panel Design Portal enables you to easily design custom MERFISH gene panels for a broad range of organisms and tissue types, refine gene lists with comprehensive tools, and request quotes for panels and MERSCOPE® Platform consumables. Additionally, you can access MERSCOPE resources directly in the Portal.
Designing a gene panel involves researching and selecting a set of genes that are relevant to your biological question of interest. The Gene List Tool enables users to add genes of interest to the MERFISH panel and provides real-time feedback to ensure the gene list meets experimental criteria. Genes can be added manually, or lists can be uploaded as a .CSV file.
The Panel Composition Tool enables you to compare a designed MERFISH panel with gene set libraries targeting different applications such as cell typing, investigating biological pathways, and studying specific diseases. We include gene set libraries from popular public repositories such as KEGG, Reactome, MSigDB, PanglaoDB, and CellMarker for you to search and compare. The Panel Composition Tool provides comprehensive annotations for genes in the listed libraries. The Sort/Cluster function highlights important genes or target areas and identifies biological patterns.
Once a MERFISH gene panel design is done, you review and finalize the details before requesting a quote. The system will assist you with selecting MERSCOPE Reagents and Consumables. Multiple MERFISH panels can be ordered in the same quote. After a quote is submitted, a member of the Vizgen sales team contacts you to confirm and place the order.
Provide required information including panel name, reference organism and tissue type.
Add genes to your custom MERFISH panel relevant to your biological question of interest.
Receive real-time feedback on your gene panel to resolve issues.
Review and finalize your custom gene panel to request a quote.
For troubleshooting or assistance, download the Gene Panel Design Portal User Guide or visit our support page
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