Resources

Vizgen is developing the next generation of genomics tools to expand on the capabilities of spatially resolved transcriptomics. Our technology will aide the acceleration of biological research and discovery to advance human health. Access supporting resources by selecting the category below.

Publications

Advances in spatial transcriptomic data analysis

Ruben Dries, Jiaji Chen, Natalie del Rossi, Mohammed Muzamil Khan, Adriana Sistig, and Guo-Cheng Yuan
Genome Research

Spatial transcriptomics is a rapidly growing field that promises to comprehensively characterize tissue organization and architecture at the single-cell or subcellular resolution. Such information provides a solid foundation for mechanistic understanding of many biological processes […]

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Videos

Spatial Biology Europe 2021- Introducing MERSCOPE

Spatial Biology Europe Online Presentation April 14, 2021 Presenter: Terry Lo, CEO, Vizgen Spatial genomics enables us to understand how biological systems are intricately spatially organized as well as how cells function and communicate together. […]

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Videos

MERFISH Technology Overview

Speaker: Dr. Jiang He, Founding Member and Director of Scientific Affairs Dr. He provides a brief overview of MERFISH technology (Multiplexed Error-Robust Fluorescence in situ Hybridization).

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Videos

AGBT 2021- Introducing MERSCOPE

Presented by Terry Lo, President & CEO of Vizgen at Advances in Genome Biology and Technology (AGBT) 2021. Discover the Vizgen MERSCOPE™ platform, the industry’s first solution to combine single-cell and spatial transcriptomics in one […]

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Videos

Meet the MERSCOPE Platform

MERSCOPE is the complete platform solution for MERFISH technology, bringing massively multiplexed, error-robust, single-cell in situ transcriptomic imaging into your laboratory. Our automated system comes with everything you need to quantify and localize RNAs in […]

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Publications

Cell segmentation in imaging-based spatial transcriptomics

Viktor Petukhov, Rosalind J. Xu, Ruslan A. Soldatov, Paolo Cadinu, Konstantin Khodosevich, Jeffrey R. Moffitt & Peter V. Kharchenko
Nature Biotechnology (2021)

Single-molecule spatial transcriptomics protocols based on in situ sequencing or multiplexed RNA fluorescent hybridization can reveal detailed tissue organization. However, distinguishing the boundaries of individual cells in such data is challenging and can hamper downstream […]

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